rs264582626 SNP Detail

Summary

• ID
  rs264582626
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4267325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCGCTC CACACAGGGT
  CGCTTGGGGT GGGGCTGGGC CGGAGAGCAG TAGCGGGGAG CAGCGAAAAG GCAAGGGGAG
  GGGGCTTCAA GCGACAGAGC CTAGGGAGCT TGGCCACGGC CCCGCCCCCC AGCTTCGGGT
  GGGGAGAGTA GAGGATGCGC GCACTCGCTC TCGGTCCAGA GCCGAGAGCG TGCCGAGAGG
  K
  CTAAGAAAAG AGGCGCGCCT CCGAGGGAGG TGCGGGTGCT GCCTCCCTGT AATACCCCAG
  AAGAGGCCGA TTTCAATGGT CGTGTCTAGC AACCACAGAA CTCGAGAGGC TCAGTGGGGG
  AATCCTTGAA GACCCTCACA GTCCTCTACT CAAGCTCTTG CACCTGCTCC GACACCCCCC
  TTCTCTAGCA CTTGGAGACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373521057	MGP_WTSI_8_4217325	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264582626					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373521057	MGP_WTSI_8_4217325	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4267325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20046	CpG island 20046	within coordinates
Gm64374	predicted gene, 64374	1787 bp downstream
Prr36	proline rich 36	within coordinates
Rr658993	regulatory region 658993	within coordinates
Tssr80255	transcription start site region 80255	1314 bp upstream
Tssr80256	transcription start site region 80256	322 bp upstream
Tssr80257	transcription start site region 80257	282 bp upstream
Tssr80258	transcription start site region 80258	199 bp upstream
Tssr80259	transcription start site region 80259	157 bp upstream
Tssr80260	transcription start site region 80260	73 bp upstream
Tssr80261	transcription start site region 80261	24 bp upstream
Tssr80262	transcription start site region 80262	141 bp downstream