rs264600202 SNP Detail

Summary

• ID
  rs264600202
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:23772292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTTGAGT GTGTCAGAGC
  TCCAGTGCTC CCATGTGTGT CCAATCTTCT AGGAATCAAG CTTCCTCTGT GATCCTGTGA
  GCCTGTGATC CTGTGAGCCT GTGATCCTGT GAGCCTGTGA TCCTGTGAGC CTGTGATCCT
  GTGAGCCTGT GAGCCTGTGA GCCTGTGATC CTGTGAGCCT GTGATCCTGT GAGCCTGTGA
  K
  CCTGTGAGCC TGTGATCCTG TGAGCCTGTG TCAGAGCACC TGTGATCCTG TGAGCCTGTG
  AGCCTGTGAG CCTGTGATCC TGTGAGCCTG TGATCCTGTG ATCCTGTGAG CCTGTGATCC
  TGTGAGCCTG TGATCCTGTG AGCCTGTGAG CCTGTGAGCC TGTGATCCTG TGAGCCTGTG
  ATCCTGTGAG CCTGTGATCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss370774554	MGP_WTSI_7_24857886	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs264600202					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370774554	MGP_WTSI_7_24857886	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:23772292 () rs orientation: forward

Symbol	Name	Function Class
Gm36694	predicted gene, 36694	within coordinates
Gm44943	predicted gene 44943	1048 bp upstream