rs264617021 SNP Detail

Summary

• ID
  rs264617021
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72195709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGCCTG CATGCAAGGT
  AGCTCAGACT TTATTTTATA TGTAGTAGAA CTTGAATATC CCCCCTTGAA ACTTATTATT
  CTAAGTATAT AAAATCCCAA GCCAGGTTCC TGATTCTTCC TCCTACCCAG AAATTCCTGC
  AAAGGTGAAG CCATTCAGAT CCTATTAATT TTTCTCCTCT TTTGCACTTT CCTACCGGGG
  M
  ACTTTGAGGT TTTAGTCAGA GCTATTTGAA TTGCCTTACA AGCGCCTTTC TCTAAGAACT
  GGCTGTGGTT GTCACAGTTG TGGTCTGGGA TCTTCTGGGC AGAAGTGGTT GGCACTTTAG
  CTGGGTGGTT AACACCTTTG CATTGGAACA CTCTCTTCCT ACAAAGGTCT CTTACAAAGC
  AAATATATAG TCACTTACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342078	CHEV_2_72203422	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264617021					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72195709 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			484 bp proximal
Rr558962	regulatory region 558962			1165 bp proximal
Tssr18337	transcription start site region 18337			349 bp downstream