rs264622242 SNP Detail

Summary

• ID
  rs264622242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:84350771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAAAAAC AAAAAACAAA
  AAAAACAAAA AAAAAAACAA AACAAAACAA AAAAAAACAA AACAAAACAA AAAAACCTCC
  CAGTGCCTTC AGGAGCCAGA GACCTAAATG GGTTAAGAGA TCAGTGAGAG TGAGTGGGTG
  GGAGCCATGG ACTCTAGAGG CGACAGTTTG CTACAAGCTT TGTTTCCCCA GCTCCCAGCA
  Y
  TCCCAGCACT GTGGCCAATT GTTACGTCCC AAGTGGAAAG ATTTGAAAGT ACTTCAAACC
  TTACACCAAC GCCATGAAGT AAGTAGGTGT CGCCGGCTTC ACATCCATTT GTTAAGTGGG
  GAGACCCAGG CATAGAATAC AAGAAGTGTT TCCACGGGCA GACAGATTGG TAGGGGTGTG
  GCTGGAGTTT GAACACAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323369356	CHEV_10_83977652	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264622242					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:84350771 () rs orientation: forward

Symbol	Name	Function Class
E230014E18Rik	RIKEN cDNA E230014E18 gene	45 bp upstream
Gm34405	predicted gene, 34405	within coordinates
Rr436162	regulatory region 436162	870 bp distal
Rr436163	regulatory region 436163	369 bp distal
Rr436164	regulatory region 436164	630 bp distal
Rr436165	regulatory region 436165	601 bp distal
Rr436166	regulatory region 436166	469 bp proximal
Rr436167	regulatory region 436167	727 bp proximal
Rr436168	regulatory region 436168	1382 bp proximal
Tssr94890	transcription start site region 94890	1803 bp upstream