rs264628145 SNP Detail

Summary

• ID
  rs264628145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12655152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cttctctcc tTATGTTTGT TGACACCTTT
  CCTCTCTTCT CTCTTCTCTt ctctctccct ccctccctcc ctctttcctc ttctctcctc
  tcccttccct tctctcctta tgtttgttga cacctttcct ctcttctctc ttctcttctc
  Y
  ctccctccct ccctccctct ttcctcttct ctcctctccc ctcccttctc tccttatgtt
  tgttgacacc tttcctctct tctctctctt ctcttctctc tccctccctc cctctttcct
  cttctctccc tcctctcctt atgtttgctg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322106837	CHEV_7_13506574	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264628145					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12655152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	455 bp proximal
Gm57203	predicted gene, 57203	within coordinates
Rps5	ribosomal protein S5	1071 bp upstream
Rr368230	regulatory region 368230	840 bp upstream
Rr642402	regulatory region 642402	within coordinates
Rr642403	regulatory region 642403	866 bp proximal
Rr642404	regulatory region 642404	1151 bp proximal
Tssr64485	transcription start site region 64485	1090 bp upstream
Tssr64486	transcription start site region 64486	1729 bp upstream
Tssr70626	transcription start site region 70626	845 bp downstream