rs264635623 SNP Detail

Summary

• ID
  rs264635623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48049788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGATGAAG CAGGGAAGGG
  GAGCCTCTGG GACGTGGCCT GAGGCCCCTA CACCCACCCT GGCCGGGATT CCACTGGCCC
  AGACTAGGCA CTCGGGCTGT TGGGGGGTGA GGTGGGGACG GTCTCCAGTT TCCTCTACGG
  CGGCCAGGTG CAGATGCTGG CAGATCCGAA CGCGGAGGCC TGGCTCGATG GCCCGCTCAC
  Y
  CCCGAGCTGC CCAGTGCCCC GCTGGAGCCA GTCGCCATCC CCCAGGCTCT GCGTTCGGGC
  AGCTCCCAGT CTAGAGAAAA TGAGCCAGCC ATAGTTACCC GCTAGCCAGG AGAGGCAGTA
  GACGGGAAGG ACAGCTGCCT CTGGAGCCTT TACTGTGCCT CAGTTTCTCT CGGCTCATTT
  GGTTCCCTTC TTTCAGCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398353131	MGP_WTSI_17_47875812	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264635623					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398353131	MGP_WTSI_17_47875812	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48049788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9270	CpG island 9270	within coordinates
Rr331731	regulatory region 331731	1988 bp distal
Rr331732	regulatory region 331732	1413 bp proximal
Rr339943	regulatory region 339943	within coordinates
Rr370272	regulatory region 370272	974 bp upstream
Rr405329	regulatory region 405329	1748 bp downstream
Rr405330	regulatory region 405330	648 bp upstream
Tfeb	transcription factor EB	within coordinates
Tssr145049	transcription start site region 145049	1756 bp downstream
Tssr145050	transcription start site region 145050	1714 bp downstream
Tssr145051	transcription start site region 145051	1656 bp downstream
Tssr145052	transcription start site region 145052	674 bp downstream
Tssr148483	transcription start site region 148483	1066 bp upstream
Tssr148484	transcription start site region 148484	492 bp downstream