rs264651447 SNP Detail

Summary

• ID
  rs264651447
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180681852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCCCTG CCTTCTCGGT
  AAACTGTCAG CATGAAAGCA GTTCCCTACC CCAGCTCTGT GGGCAGCGAG CTACTGGCCA
  GAGAGGAGAG GTGCTTGGAG ACAAGCTGTA GGGTGCTAGG GATGGTCCTG AGGGATGCCA
  CTAAGGAGAA GGTGCTCGAG TACTTTGGTT CCTAGAGTGC TTTGGTGGCA CGCGGGGGGG
  S
  GGGGGGGAGG CTGGGGGGGA GGTGCGAGAG GGAGGGGGCA TCTAAGCAGC AGGTGATGGA
  AGGAGAGACA ACGGGTTCCC AAGAAGAAAG AAACCCTGTC CAACACCAAA AGCCAGATCC
  CAACCATGCC TTGTCCCAGA GACTCTGCCG TTGACTCCAA GCCCCAAGAT GGAGACAATC
  CTGAAGTTGA AGGCAAGAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	FVB/NJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	SEA/GnJ	SWR/J	WSB/EiJ
ss356772256	MGP_WTSI_2_180774764	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	C	C	G	C	C	C	C	C	C	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	FVB/NJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	SEA/GnJ	SWR/J	WSB/EiJ
rs264651447					SNP	G	C	C	C	G	C	C	C	C	C	C	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356772256	MGP_WTSI_2_180774764	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180681852 () rs orientation: forward

Symbol	Name	Function Class
Chrna4	cholinergic receptor, nicotinic, alpha polypeptide 4	Intron
Cpgi12912	CpG island 12912	235 bp distal
Gm74971	predicted gene, 74971	1228 bp downstream
Rr572909	regulatory region 572909	995 bp distal
Rr572910	regulatory region 572910	264 bp distal
Rr572911	regulatory region 572911	1918 bp proximal
Tssr28154	transcription start site region 28154	867 bp upstream
Tssr28155	transcription start site region 28155	831 bp upstream
Tssr28156	transcription start site region 28156	777 bp upstream
Tssr28157	transcription start site region 28157	739 bp upstream