rs264663790 SNP Detail

Summary

• ID
  rs264663790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129273858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCGGACA GGTGTGCAGG
  ATGCCTTTGG GAAGCCCCTG GGCACAGTGG CCAGGGTTTA CTTTGGCCAG GTCACCCTGT
  CCCTCTACGC CAAGCTTTCA GATAAGGGCC ATGTGACTGA GGCTCTACAG GGAGCCAAGT
  TCAAGTTCCT GGCCACCAGA AGATCCATAT CTCAAGGAAG TGGAGCTTCC CCAAATGTAA
  Y
  GCTGATGAAT TTGAAGACGT GGTAGCTGAG AAGTGCCTTA TCCCTGTTGG CTGTAGGGTC
  AAATGTATCC TCACTTGTGG TCCCCTGGAC AAGTGGCAGG CCCTGTACTC CTGAGGGCTT
  CCACTGTGCT CTCCTATACC CCACCGAATC ATACACAGTA GTAAATCTCA ACAGTTTGGG
  GGGGAAAAGG TTTGGGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312512	CHEV_4_129057309	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264663790					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129273858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	1986 bp distal
Gm12980	predicted gene 12980	within coordinates
Rr377177	regulatory region 377177	within coordinates
Rr600215	regulatory region 600215	1960 bp distal
Rr600217	regulatory region 600217	1693 bp distal
Tssr39145	transcription start site region 39145	1350 bp upstream
Tssr43500	transcription start site region 43500	1059 bp upstream