rs264664782 SNP Detail

Summary

• ID
  rs264664782
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149978950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAAGGG TCTATCTTCT
  GTAAATAAAT AAATAAATTA TTAGTCATCG GTGGCATTGG GAAGTGAACC TTAGAAGTTT
  GTGCTTGCCA GGCACTGGTC TCTGCTATTG AGGCAGAAGA GGTCCAGCCT TTACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACATACAAAA TCCCCTTCTA
  W
  GCTTCTTTAA ACAATGTAAA ATTACTATTA TGGTTATAAT GAAGCAAGTG GCATATTTAA
  TATAGGATAC TAATACTATT CAACATAAAG AAATATACAG ACTTGTAGCT CTGGTAGACA
  AATTATTTTA GAATTTTGTG GCTATGAAAA AGTCACTTAT TGAGCTAGAT TGGTGATTAA
  GAACAGTTGT TGCTTTTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351888738	MGP_WTSI_1_151950329	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264664782					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888738	MGP_WTSI_1_151950329	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149978950 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	1051 bp proximal
Rr24983	regulatory region 24983	1083 bp proximal
Rr31002	regulatory region 31002	1550 bp distal
Tssr242	transcription start site region 242	394 bp downstream
Tssr9227	transcription start site region 9227	1926 bp downstream
Tssr9228	transcription start site region 9228	1886 bp downstream
Tssr9229	transcription start site region 9229	1873 bp downstream
Tssr9230	transcription start site region 9230	1086 bp downstream
Tssr9231	transcription start site region 9231	1053 bp downstream
Tssr9232	transcription start site region 9232	1010 bp downstream
Tssr9233	transcription start site region 9233	554 bp downstream
Tssr9234	transcription start site region 9234	525 bp downstream
Tssr9235	transcription start site region 9235	494 bp downstream
Tssr9236	transcription start site region 9236	469 bp downstream
Tssr9237	transcription start site region 9237	437 bp downstream
Tssr9238	transcription start site region 9238	406 bp downstream
Tssr9239	transcription start site region 9239	372 bp downstream
Tssr9240	transcription start site region 9240	358 bp downstream
Tssr9241	transcription start site region 9241	328 bp downstream
Tssr9242	transcription start site region 9242	312 bp downstream
Tssr9243	transcription start site region 9243	185 bp downstream
Tssr9244	transcription start site region 9244	134 bp downstream
Tssr9245	transcription start site region 9245	98 bp downstream
Tssr9246	transcription start site region 9246	79 bp downstream
Tssr9247	transcription start site region 9247	46 bp upstream
Tssr9248	transcription start site region 9248	466 bp upstream
Tssr9249	transcription start site region 9249	493 bp upstream
Tssr9250	transcription start site region 9250	661 bp upstream
Tssr9251	transcription start site region 9251	707 bp upstream
Tssr9252	transcription start site region 9252	762 bp upstream
Tssr9253	transcription start site region 9253	792 bp upstream
Tssr9254	transcription start site region 9254	819 bp upstream
Tssr9255	transcription start site region 9255	838 bp upstream
Tssr9256	transcription start site region 9256	1078 bp upstream
Tssr9257	transcription start site region 9257	1102 bp upstream
Tssr9258	transcription start site region 9258	1125 bp upstream
Tssr9259	transcription start site region 9259	1150 bp upstream
Tssr9260	transcription start site region 9260	1205 bp upstream
Tssr9261	transcription start site region 9261	1260 bp upstream
Tssr9262	transcription start site region 9262	1268 bp upstream
Tssr9263	transcription start site region 9263	1290 bp upstream
Tssr9264	transcription start site region 9264	1335 bp upstream
Tssr9265	transcription start site region 9265	1366 bp upstream
Tssr9266	transcription start site region 9266	1455 bp upstream
Tssr9267	transcription start site region 9267	1746 bp upstream
Tssr9268	transcription start site region 9268	1802 bp upstream
Tssr14130	transcription start site region 14130	1937 bp upstream
Tssr14131	transcription start site region 14131	1881 bp upstream