rs264677420 SNP Detail

Summary

• ID
  rs264677420
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80073876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTAAGTA AACTGCAGCT
  ATCTTCAGAC ACACCAGAAG AAGGCATCAG ATCCCATTAT GGATGGTTGT GAGCCACCCT
  GTGGTTGCTG GGCATTGAAC TCGGGACTTT GGAAGAGCAA TCAGTGCTCT TAACTGCTGA
  GCCATCTCTC CAGCCCTGAT TTACTTATTT TTTTTTCTTT TTCCATTTTT TTTTTTTTTT
  K
  GTTTTGTTTT GTTTTGTTTT TCGAGACAGG GTTTCTCTGT ATAGCCCTGG CTGTCCTGGA
  ACTCACTTTG TAGACCAGGC TGGCCTCGAA CTCAGAAATC CGCCTGCCTT AAAGGCGTGC
  TCCACCACGC CTGGCTTCCA ATTTTTTGTT AGGTATTTTC TTCATTTACA TTTCAAATGC
  TATCCCGAAA GTCTCCTATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
ss383995308	MGP_WTSI_11_79996552	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
rs264677420					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383995308	MGP_WTSI_11_79996552	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80073876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3379	CpG island 3379	711 bp proximal
D11Bhm113	DNA segment, Chr 11, Boehm 113	1977 bp distal
Rnf135	ring finger protein 135	801 bp upstream
Rr386348	regulatory region 386348	1231 bp downstream
Rr402781	regulatory region 402781	665 bp upstream
Rr452449	regulatory region 452449	1466 bp distal
Rr452450	regulatory region 452450	311 bp proximal
Rr452451	regulatory region 452451	318 bp proximal
Rr452452	regulatory region 452452	505 bp proximal
Tssr3599	transcription start site region 3599	857 bp upstream
Tssr103509	transcription start site region 103509	811 bp upstream
Tssr103510	transcription start site region 103510	836 bp upstream