rs264678247 SNP Detail

Summary

• ID
  rs264678247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121979052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACAGCCA GGGTTACACA
  AAGAAACCCT GTCTCGAAAA AATAAATAAA GGTCTCTGGG TATGAGGCTT ATTGCAATGC
  TGAGGACCTT GTGAGCTTCT TAAGTTTGAA AGTACGTCTA CAATGTAAAT GTTATGGTTC
  CCCGTGTATT AAGACAGGGA ACTAGAGGAG GCATCGAGAT TTAAAGTAAC TTATTCACAC
  R
  ATAGACTAAT GGCAGTCGGA GCTGGAATTG AGGCCGATCA ATGCCCAGGC CTTTGGACTG
  TAACCGCCAT TTGTTTCTAG AAGTGTCTAG GCCTTCCTGG GTCATGGTCT GTGAAGCAGT
  CTGAGATGCC TTGGACCCTT GGTACCTCAC ACAGCGCTTC CTTTTTGGCA CACTGCCTGG
  TTCTTTCCGC GATAGAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355480689	MGP_WTSI_2_121974307	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264678247					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355480689	MGP_WTSI_2_121974307	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121979052 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	Intron
Cpgi12169	CpG island 12169	327 bp distal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	842 bp downstream
Rr563912	regulatory region 563912	875 bp distal
Rr563913	regulatory region 563913	within coordinates
Tssr19804	transcription start site region 19804	1077 bp downstream
Tssr19805	transcription start site region 19805	875 bp downstream
Tssr19806	transcription start site region 19806	843 bp downstream
Tssr19807	transcription start site region 19807	593 bp upstream
Tssr19808	transcription start site region 19808	646 bp upstream
Tssr19809	transcription start site region 19809	990 bp upstream
Tssr19810	transcription start site region 19810	1991 bp upstream
Tssr25953	transcription start site region 25953	1614 bp upstream
Tssr25954	transcription start site region 25954	1051 bp upstream