rs264696534 SNP Detail

Summary

• ID
  rs264696534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130550283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTCCTGCA GCCTCCACTC CGCCTCGCCC
  AGTCCCTGGC CCCAGCAGCA GCCCAGGCCT GATCCTGGGC CTGGGCCTGG GCCTGGGATG
  GAGCCTGGCC CTGCTTCTTT CTGCTCAGGC TGCTAGCGTA ACACAGACTG TCCTAAGGAG
  Y
  AGAGGTGCTG CCATCTGCCC CAGACTGTGT CCTTATGACC CCTTCTTTGG TCCCATTCCC
  TCCAGCCCGG GGCTTCAGGA CCTTGTGTCC CATGGACAAG AGGAAGGAAG CCCTGGGTTG
  CTGGTTGAAA CAGGGGCAGG GGCAGGGTTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318864	CHEV_4_130378887	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264696534					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130550283 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	1422 bp downstream
Sdc3	syndecan 3	within coordinates
Tssr39279	transcription start site region 39279	771 bp downstream
Tssr39280	transcription start site region 39280	304 bp downstream
Tssr39281	transcription start site region 39281	246 bp downstream
Tssr39282	transcription start site region 39282	70 bp upstream
Tssr39283	transcription start site region 39283	140 bp upstream
Tssr39284	transcription start site region 39284	341 bp upstream
Tssr39285	transcription start site region 39285	411 bp upstream
Tssr39286	transcription start site region 39286	478 bp upstream
Tssr39287	transcription start site region 39287	504 bp upstream
Tssr39288	transcription start site region 39288	539 bp upstream
Tssr39289	transcription start site region 39289	668 bp upstream
Tssr39290	transcription start site region 39290	675 bp upstream
Tssr39291	transcription start site region 39291	823 bp upstream
Tssr39292	transcription start site region 39292	900 bp upstream