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rs264717420 SNP Detail
Summary
  • ID
    rs264717420
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr11:94842214 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AACATCACCT ATCACTGCAA
GAACAGCGTA GCCTACATGG ACCAGCAGAC TGGCAACCTC AAGAAGGCCC TGCTCCTCCA
GGGATCCAAC GAGATCGAGC TCAGAGGCGA AGGCAACAGT CGCTTCACCT ACAGCACCCT
TGTGGACGGC TGCACGGTGA GTCCCCCAGA CTGGGTCCAG CCTGTCTCTT TGGGCATCTG
K
TTTAGCCTTC TGGCAGAACA GAGTGAGCCT CACTTCATTC CTACCTTGGT AATGACCCTC
TCCCGCTGTC TTCATTCACA CCAGAGTCAC ACCGGAACTT GGGGCAAGAC AGTCATCGAA
TACAAAACCA CCAAGACCTC CCGCCTGCCC ATCATCGATG TGGCTCCCTT GGACATTGGT
GCCCCAGACC AGGAATTCGG                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336269 MGP_WTSI_11_94812702 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264717420 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336269 MGP_WTSI_11_94812702 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94842214 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
D11Lis1 DNA segment, Chr 11, Lisse 1 1930 bp proximal
Tssr3647 transcription start site region 3647 593 bp upstream
Tssr104261 transcription start site region 104261 1954 bp downstream
Tssr104262 transcription start site region 104262 1214 bp downstream
Tssr104263 transcription start site region 104263 1081 bp downstream
Tssr104264 transcription start site region 104264 1059 bp downstream
Tssr104265 transcription start site region 104265 1033 bp downstream
Tssr104266 transcription start site region 104266 1021 bp downstream
Tssr104267 transcription start site region 104267 954 bp downstream
Tssr104268 transcription start site region 104268 926 bp downstream
Tssr104269 transcription start site region 104269 913 bp downstream
Tssr104270 transcription start site region 104270 892 bp downstream
Tssr104271 transcription start site region 104271 838 bp downstream
Tssr104272 transcription start site region 104272 644 bp downstream
Tssr104273 transcription start site region 104273 550 bp downstream
Tssr104274 transcription start site region 104274 532 bp downstream
Tssr104275 transcription start site region 104275 523 bp downstream
Tssr104276 transcription start site region 104276 512 bp downstream
Tssr104277 transcription start site region 104277 238 bp downstream
Tssr104278 transcription start site region 104278 217 bp downstream
Tssr104279 transcription start site region 104279 160 bp downstream
Tssr104280 transcription start site region 104280 148 bp downstream
Tssr104281 transcription start site region 104281 134 bp downstream
Tssr104282 transcription start site region 104282 64 bp downstream
Tssr104283 transcription start site region 104283 73 bp upstream
Tssr104284 transcription start site region 104284 98 bp upstream
Tssr104285 transcription start site region 104285 167 bp upstream
Tssr104286 transcription start site region 104286 189 bp upstream
Tssr104287 transcription start site region 104287 216 bp upstream
Tssr104288 transcription start site region 104288 238 bp upstream
Tssr104289 transcription start site region 104289 279 bp upstream
Tssr104290 transcription start site region 104290 325 bp upstream
Tssr104291 transcription start site region 104291 334 bp upstream
Tssr104292 transcription start site region 104292 372 bp upstream
Tssr104293 transcription start site region 104293 520 bp upstream
Tssr104294 transcription start site region 104294 557 bp upstream
Tssr104295 transcription start site region 104295 615 bp upstream
Tssr104296 transcription start site region 104296 634 bp upstream
Tssr104297 transcription start site region 104297 667 bp upstream
Tssr104298 transcription start site region 104298 705 bp upstream
Tssr104299 transcription start site region 104299 733 bp upstream
Tssr104300 transcription start site region 104300 753 bp upstream
Tssr104301 transcription start site region 104301 877 bp upstream
Tssr104302 transcription start site region 104302 889 bp upstream
Tssr104303 transcription start site region 104303 903 bp upstream
Tssr104304 transcription start site region 104304 942 bp upstream
Tssr104305 transcription start site region 104305 967 bp upstream
Tssr104306 transcription start site region 104306 982 bp upstream
Tssr104307 transcription start site region 104307 998 bp upstream
Tssr104308 transcription start site region 104308 1068 bp upstream
Tssr104309 transcription start site region 104309 1088 bp upstream
Tssr104310 transcription start site region 104310 1133 bp upstream
Tssr104311 transcription start site region 104311 1229 bp upstream
Tssr104312 transcription start site region 104312 1299 bp upstream
Tssr104313 transcription start site region 104313 1315 bp upstream
Tssr104314 transcription start site region 104314 1731 bp upstream
Tssr110222 transcription start site region 110222 490 bp upstream
Tssr110223 transcription start site region 110223 131 bp upstream
Tssr110224 transcription start site region 110224 67 bp upstream
Tssr110225 transcription start site region 110225 121 bp downstream
Tssr110226 transcription start site region 110226 154 bp downstream
Tssr110227 transcription start site region 110227 193 bp downstream
Tssr110228 transcription start site region 110228 205 bp downstream
Tssr110229 transcription start site region 110229 265 bp downstream
Tssr110230 transcription start site region 110230 296 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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