rs264722649 SNP Detail

Summary

• ID
  rs264722649
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22715069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTCCTGT TTCCTCTCTG
  AAAACTTAAC CTCTGCCCCA TGCGATGGAC AACGATCTCT TGCCAATACT TTGAGAAGAC
  TCAGATCTTT CATCTGCAGC CCATCGTCAG AACTCAATCC TTCCAATTGC CCAGGGCCAC
  ACGTAGTCCG TGTGGATTTG TGTTCTCTCA AACTGTGCCA GACCATAGCT TCTCCTCTCC
  M
  TCCCTCCCAC CCTCCCTCTT ACCTTCCTTC CTCCTCTCCT TTGCTCCCTC CCTCCCTCTC
  CCTCCTCCTC TCTGTCACTT CCTCCCTCTA TCCCACCTCT CCTTCCCCCC TCCCTCCCTC
  TGTCCCACCT CTTCTTGCCC CTCTTGTTCC AGACCATCTT TCCCACGTGT TCTCATTTTC
  ATTCTCAGCC TCTCCCAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628397	MGP_WTSI_16_22896392	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264722649					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628397	MGP_WTSI_16_22896392	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22715069 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1933 bp upstream
Rr513336	regulatory region 513336	1989 bp distal
Rr513337	regulatory region 513337	1523 bp distal
Tssr4819	transcription start site region 4819	978 bp downstream
Tssr4820	transcription start site region 4820	362 bp downstream
Tssr137565	transcription start site region 137565	1911 bp downstream
Tssr137566	transcription start site region 137566	1902 bp downstream
Tssr137567	transcription start site region 137567	1534 bp downstream
Tssr137568	transcription start site region 137568	1503 bp downstream
Tssr137569	transcription start site region 137569	1482 bp downstream
Tssr137570	transcription start site region 137570	1465 bp downstream
Tssr137571	transcription start site region 137571	1127 bp downstream
Tssr137572	transcription start site region 137572	1028 bp downstream
Tssr137573	transcription start site region 137573	1018 bp downstream
Tssr137574	transcription start site region 137574	999 bp downstream
Tssr137575	transcription start site region 137575	989 bp downstream
Tssr137576	transcription start site region 137576	304 bp downstream
Tssr137577	transcription start site region 137577	103 bp upstream
Tssr137578	transcription start site region 137578	174 bp upstream
Tssr137579	transcription start site region 137579	1796 bp upstream
Tssr137580	transcription start site region 137580	1846 bp upstream
Tssr140504	transcription start site region 140504	1927 bp upstream
Tssr140505	transcription start site region 140505	1878 bp upstream
Tssr140506	transcription start site region 140506	1458 bp upstream
Tssr140507	transcription start site region 140507	1095 bp upstream
Tssr140508	transcription start site region 140508	1053 bp upstream
Tssr140509	transcription start site region 140509	1035 bp upstream
Tssr140510	transcription start site region 140510	987 bp upstream
Tssr140511	transcription start site region 140511	973 bp upstream
Tssr140512	transcription start site region 140512	238 bp downstream
Tssr140513	transcription start site region 140513	249 bp downstream
Tssr140514	transcription start site region 140514	282 bp downstream
Tssr140515	transcription start site region 140515	1857 bp downstream
Tssr140516	transcription start site region 140516	1876 bp downstream