rs264731231 SNP Detail

Summary

• ID
  rs264731231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:87749403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGGCATA GGCAGGATCC
  TGGAACACAG ACTGAAAACA TGGGAAGACT TCATACAAAT AAAGTGCATG ACAAGTGAAG
  TCTTACTTCT TGAGTATGCT TACATATGGG AATCTAAAAG AAAGTACTGG GTCAGGCATA
  TTGGAAATAC TTAAAGAAAA GAGTGACATG TTGGAGAAGT ATGTAGACTT GATGTGGGAA
  R
  AAGAAAGGCA TCAGAGGATA GATAAAAGTC TTTGAAAAAT AGGCAGTTCT AACACCAGCC
  CATTCTGATT TGTGCAGACA AGCCCACAGG CTATGGCTCC AGCATTCGGA GGGCACCTCA
  GACAGGCATT GTGGATGAGT GTTGCTTCCG GAGCTGTGAT CTGAGGAGAC TGGAGATGTA
  CTGTGCCCCA CTGAAGCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381166106	MGP_WTSI_10_87376286	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264731231					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381166106	MGP_WTSI_10_87376286	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:87749403 () rs orientation: forward

Symbol	Name	Function Class
Igf1	insulin-like growth factor 1	Intron
Tssr95088	transcription start site region 95088	64 bp upstream
Tssr95089	transcription start site region 95089	85 bp upstream
Tssr95090	transcription start site region 95090	107 bp upstream
Tssr95091	transcription start site region 95091	123 bp upstream
Tssr95092	transcription start site region 95092	150 bp upstream
Tssr95093	transcription start site region 95093	163 bp upstream
Tssr95094	transcription start site region 95094	206 bp upstream
Tssr95095	transcription start site region 95095	225 bp upstream
Tssr95096	transcription start site region 95096	835 bp upstream
Tssr95097	transcription start site region 95097	851 bp upstream
Tssr95098	transcription start site region 95098	983 bp upstream
Tssr95099	transcription start site region 95099	1746 bp upstream
Tssr98816	transcription start site region 98816	1780 bp downstream