rs264736172 SNP Detail

Summary

• ID
  rs264736172
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143802835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTT TCGAAATTAA AACACAAAGA
  G
  GAGGTTGGAG AGACGGTTCA GTAGT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321708587	CHEV_5_144577949	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264736172					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143802835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16998	CpG island 16998	384 bp proximal
Eif2ak1	eukaryotic translation initiation factor 2 alpha kinase 1	751 bp upstream
Rr399488	regulatory region 399488	9 bp upstream
Rr399489	regulatory region 399489	478 bp upstream
Rr624298	regulatory region 624298	108 bp proximal
Rr624299	regulatory region 624299	218 bp proximal
Rr624300	regulatory region 624300	719 bp proximal
Rr624301	regulatory region 624301	1058 bp proximal
Tssr49676	transcription start site region 49676	706 bp upstream
Tssr49677	transcription start site region 49677	739 bp upstream
Tssr49678	transcription start site region 49678	769 bp upstream