rs264747260 SNP Detail

Summary

• ID
  rs264747260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:82601083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTATTTCT AGGTGGATAA
  AAGGAGCCTT TGCCTCTTGT AGTGTCCCCA TGAGGTTGTA GGGTCTCATG GGGACAAAGG
  TATCCAGCAG AGAGTGCTCG CTTCACATCG CAGGTACACG TTTAAATCAA CCTGTTCCTG
  GTGAGCGCAG GTTTACCAGT TATGGGGCCT AACGCCCACC AAAGACAGAG CAAGTGGCAC
  R
  AGAGACAAAA GGCATGAAAG AAAATGGAAG CAGTGGTGGG TGCCCACCTT GCTGGCTCTA
  GCCCTTGCTT CCCTCTGCTG GCCGACCTTG GGAAGATGAC TCAACTTCTC TGATCTTTGA
  TTATCATATA AAATAAGCCT GTACTCAAGG TTGGCTGTGA GTACAAGCAG GGCATCAGGT
  GGAAGGGCCT GTGCTCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436699	MGP_WTSI_18_82752350	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264747260					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436699	MGP_WTSI_18_82752350	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82601083 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbp	myelin basic protein			Intron
				Noncoding-Transcript-Variant
Rr541827	regulatory region 541827			707 bp proximal
Tssr152152	transcription start site region 152152			1150 bp upstream
Tssr152153	transcription start site region 152153			1178 bp upstream
Tssr152154	transcription start site region 152154			1292 bp upstream
Tssr152155	transcription start site region 152155			1330 bp upstream
Tssr152156	transcription start site region 152156			1403 bp upstream
Tssr152157	transcription start site region 152157			1454 bp upstream
Tssr152158	transcription start site region 152158			1511 bp upstream
Tssr152159	transcription start site region 152159			1541 bp upstream
Tssr152160	transcription start site region 152160			1591 bp upstream
Tssr152161	transcription start site region 152161			1608 bp upstream
Tssr152162	transcription start site region 152162			1624 bp upstream
Tssr152163	transcription start site region 152163			1649 bp upstream
Tssr152164	transcription start site region 152164			1689 bp upstream
Tssr152165	transcription start site region 152165			1742 bp upstream
Tssr152166	transcription start site region 152166			1808 bp upstream
Tssr152167	transcription start site region 152167			1823 bp upstream
Tssr152168	transcription start site region 152168			1858 bp upstream
Tssr152169	transcription start site region 152169			1919 bp upstream
Tssr152170	transcription start site region 152170			2000 bp upstream
Tssr154083	transcription start site region 154083			1259 bp downstream
Tssr154084	transcription start site region 154084			1283 bp downstream
Tssr154085	transcription start site region 154085			1555 bp downstream