rs264760211 SNP Detail

Summary

• ID
  rs264760211
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148491183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCGTGT GTGTTTAATA
  AGCACAGAAC CCTTCCCCAC CATGAACCCT TCTGGAAATC CAAACAACTG AAGCTTTTCA
  GTCCACCAAC AGATTCTGAA GGAGTACTGC ATTACCATTT AAAGATGTTT ACCACGTTAA
  TTCCCCATGC CACACCTACT CTCAGCCCCC TTTCCCATGC CACGCCTACT CTCCTCAGCC
  Y
  CCTTCCCCCT CCCCACCACC CACCATGGCT CTGACAGACC TAAGTGCTGT TGAAAGGCAA
  GAAGCAGAAG TTGGCAGAAC GAAGGAAAGC TGTCCGCCAG CCCCATTGCC AGGGATGTAA
  TGACCCCTAC TTTGAGCCCA AAATCACACA GCATGTCTTC TACGGGATGC TGTCTGCCAC
  TGCCCCTTCT GTATAAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321718365	CHEV_5_149365949	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264760211					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148491183 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	512 bp upstream
Cpgi17076	CpG island 17076	1226 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	448 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr625194	regulatory region 625194	1722 bp distal
Rr625195	regulatory region 625195	1094 bp distal
Rr625196	regulatory region 625196	1556 bp distal
Rr625197	regulatory region 625197	522 bp distal
Rr625198	regulatory region 625198	218 bp distal
Rr625199	regulatory region 625199	within coordinates
Tssr49862	transcription start site region 49862	1980 bp downstream
Tssr54574	transcription start site region 54574	1945 bp upstream
Tssr54575	transcription start site region 54575	1856 bp upstream
Tssr54576	transcription start site region 54576	1685 bp upstream
Tssr54577	transcription start site region 54577	1530 bp upstream
Tssr54578	transcription start site region 54578	492 bp upstream
Tssr54579	transcription start site region 54579	348 bp upstream
Ubl3	ubiquitin-like 3	1584 bp upstream