rs264770452 SNP Detail

Summary

• ID
  rs264770452
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:28422033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATA CTAGGAAAAC GAGGCCGGTA
  S
  CTGGTTAACG TAAAGCATAA TAGCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321773885	CHEV_6_28372034	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264770452					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28422033 () rs orientation: forward

Symbol	Name	Function Class
Arf5	ARF GTPase 5	1570 bp upstream
Cpgi17215	CpG island 17215	71 bp distal
Cpgi17216	CpG island 17216	1196 bp proximal
Gcc1	golgi coiled coil 1	within coordinates
Rr399587	regulatory region 399587	119 bp downstream
Rr627380	regulatory region 627380	within coordinates
Rr627381	regulatory region 627381	111 bp distal
Rr627382	regulatory region 627382	1036 bp proximal
Tssr55188	transcription start site region 55188	228 bp downstream
Tssr55189	transcription start site region 55189	1500 bp upstream
Tssr55190	transcription start site region 55190	1505 bp upstream
Tssr60058	transcription start site region 60058	492 bp upstream
Tssr60059	transcription start site region 60059	442 bp upstream
Tssr60060	transcription start site region 60060	293 bp upstream