rs264808233 SNP Detail

Summary

• ID
  rs264808233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:114961293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCATTGGT TATGCTTTCA
  GTACCTCATT TACATGCCTT GGGCCAGGCA GTGACTCTGC CAAAAAAAAA AAAAATAAAT
  AAACCCTACT GTACATGGGC ACATTGATTG TTTACCCATA TATATATAGG TGTCAGCTTA
  TTGAAATCAG CACCATCTTG TAATGGCGTT TATTGGCTTC CCACAACCAG AGGCCCGGGC
  Y
  TGGGCCCGCC CCCGCCCTGT ACAAGCTCCC CACGCCCGGA TCCCGCTGCA AACGCGCACC
  CTCCGCACCG CCCCGCTTAC CCAGGCTCTG CCTCCGCAGC ACCTCGTAGG ACCGGCTCTG
  CTCCGGCGGC AACCCGGGGC TCGGGGCCTC GGCTCGCCCC AGCAGGAGGC TGCAGAGCAC
  GGGCAACAGC CGCATCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366343618	MGP_WTSI_5_115273241	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264808233					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366343618	MGP_WTSI_5_115273241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114961293 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2610524H06Rik	RIKEN cDNA 2610524H06 gene			Intron
Cpgi16338	CpG island 16338			11 bp proximal
Gm46920	predicted gene, 46920			498 bp upstream
Gm57857	predicted gene, 57857			Intron
				Noncoding-Transcript-Variant
Gm72061	predicted gene, 72061			298 bp upstream
Gm72071	predicted gene, 72071			526 bp downstream
Gm72099	predicted gene, 72099			within coordinates
Rr378493	regulatory region 378493			28 bp downstream
Rr618037	regulatory region 618037			203 bp proximal
Rr618038	regulatory region 618038			395 bp proximal
Rr618039	regulatory region 618039			634 bp proximal
Rr618040	regulatory region 618040			1050 bp proximal
Rr618041	regulatory region 618041			1270 bp proximal
Tssr52734	transcription start site region 52734			208 bp downstream
Tssr52735	transcription start site region 52735			229 bp downstream
Tssr52736	transcription start site region 52736			246 bp downstream