rs264812317 SNP Detail

Summary

• ID
  rs264812317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:113367196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAATTCTC CACTCCAAAC TATGCACTCA GGCTCCAGGC
  ACCGACTCCC TCAGCCCCTC AGCCCTTGAC CAGGATCGGC TTTGTTCCTT AAGGAGTCCA
  Y
  AAGATCCTTC TTTCCGAAGA AAGATGTTGG ATTAAAAAAA AAAAAAAAGC TCCCAGCCAG
  GGAGGAAGCA CACAGCTTGG TGAAAGGAGT CTCAGACCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322424340	CHEV_7_120911473	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264812317					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113367196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	936 bp distal
Rr653859	regulatory region 653859	1775 bp distal
Rr653860	regulatory region 653860	8 bp distal
Rr653861	regulatory region 653861	693 bp proximal
Rr653862	regulatory region 653862	1316 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	Intron
Tssr68628	transcription start site region 68628	1920 bp downstream
Tssr68629	transcription start site region 68629	1896 bp downstream
Tssr68630	transcription start site region 68630	1861 bp downstream
Tssr68631	transcription start site region 68631	1760 bp downstream
Tssr68632	transcription start site region 68632	1704 bp downstream