rs264813149 SNP Detail

Summary

• ID
  rs264813149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164173520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCAAAAA TAAATTTTTT
  TAAGTTATGC TATTGTTACA CATACAGCTT GCCACCTAAA TCTTACTGAT CTATAGGTAT
  ATGGAAATAA CCATAATGTT ACATGTAAAA AGCAAGCAAA CAAACAAACA AAAACAGGCC
  GAGCAAACCA TTGGAGCAAG CCAGTAAGCA GTGGTACATA GCATCTGCTT CACTTCCTGT
  Y
  GCTAGGTGAC CACTAGAGTT TCTGTTCTCA TATCCTTCAT TATAGAGTGT AAGGTAAAAG
  ACGAAATAAA CCCTTTCCTT CCCCCAGGTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC ACACACACAC ACACACACAC TATTCTGCAG
  GTAGATGTCA TGATGAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356429509	MGP_WTSI_2_164157336	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264813149					SNP	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356429509	MGP_WTSI_2_164157336	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164173520 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	1165 bp upstream
Tssr744	transcription start site region 744	1729 bp upstream
Tssr745	transcription start site region 745	1772 bp upstream
Tssr746	transcription start site region 746	1783 bp upstream
Tssr747	transcription start site region 747	1796 bp downstream
Tssr748	transcription start site region 748	1817 bp upstream
Tssr749	transcription start site region 749	1849 bp upstream
Tssr750	transcription start site region 750	1862 bp upstream
Tssr751	transcription start site region 751	1916 bp upstream
Tssr752	transcription start site region 752	1985 bp upstream
Tssr753	transcription start site region 753	1992 bp upstream
Tssr21562	transcription start site region 21562	1123 bp upstream
Tssr21563	transcription start site region 21563	1140 bp upstream
Tssr21564	transcription start site region 21564	1159 bp upstream
Tssr21565	transcription start site region 21565	1184 bp upstream
Tssr21566	transcription start site region 21566	1194 bp upstream
Tssr21567	transcription start site region 21567	1208 bp upstream
Tssr21568	transcription start site region 21568	1218 bp upstream
Tssr21569	transcription start site region 21569	1695 bp upstream
Tssr21570	transcription start site region 21570	1757 bp upstream
Tssr21571	transcription start site region 21571	1788 bp upstream
Tssr21572	transcription start site region 21572	1805 bp upstream
Tssr21573	transcription start site region 21573	1834 bp upstream
Tssr21574	transcription start site region 21574	1898 bp upstream
Tssr27433	transcription start site region 27433	1753 bp downstream
Tssr27434	transcription start site region 27434	1776 bp downstream
Tssr27435	transcription start site region 27435	1804 bp downstream
Tssr27436	transcription start site region 27436	1823 bp downstream
Tssr27437	transcription start site region 27437	1844 bp downstream
Tssr27438	transcription start site region 27438	1874 bp downstream
Tssr27439	transcription start site region 27439	1888 bp downstream
Tssr27440	transcription start site region 27440	1898 bp downstream
Tssr27441	transcription start site region 27441	1953 bp downstream
Tssr27442	transcription start site region 27442	1961 bp downstream