rs264825632 SNP Detail

Summary

• ID
  rs264825632
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99509415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATATACC TCTGAATGAA
  AGAGACAAAA TGTTCTTGGC AAGGCTATGT TCACATGATC ACTAAAGAAT AGCAGATTAG
  ATTTCATCCT CGATTAAGCA ATTCCTGGCC ACTCCAGTTG TAAGGGTCCA AAAATCACTG
  AAAGAAGACC CCAGGCTCAG AGAGTATACA AAAACAAAGA GCATTTATTC TGCAGAAACA
  M
  CAGCATGCAG GGGCCAACCA TTCTTTGAAA TGGTGACCCC AGATAAACGC ATGCAGGCCT
  TCTTATAGAG AACTGAGGGA ACTCTCTAGA AGGATTAGGT GATCTAAAAT TTCATTGGTA
  GGTGCTGGGG GTGGGGGTGG GGGGGGTCAT AGGTGATCAG AAGTCTACAT TCCCATGTCA
  TGAGCATTCA ATCGTGTGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372505147	MGP_WTSI_7_107008718	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264825632					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372505147	MGP_WTSI_7_107008718	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99509415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	879 bp distal
Rr400465	regulatory region 400465	1079 bp downstream
Rr652012	regulatory region 652012	1082 bp distal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	1088 bp downstream
Tssr68078	transcription start site region 68078	1068 bp downstream
Tssr73711	transcription start site region 73711	1905 bp upstream
Tssr73712	transcription start site region 73712	1302 bp upstream
Tssr73713	transcription start site region 73713	1287 bp upstream
Tssr73714	transcription start site region 73714	1201 bp upstream
Xrra1	X-ray radiation resistance associated 1	within coordinates