rs264831046 SNP Detail

Summary

• ID
  rs264831046
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:85125283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atacatgag tcTCATTACC GAGTTCACAG
  CCTCAGTACT ATTGCAAAAG GCATAGGGAA AAGGTGAAGA CTGCATTCCT CAAGTTTGCT
  TAAATTAAGG TGCAGGATGA CATTCACCCC TGAGCATCAT CTCTGTCACC ATAGACTTAG
  M
  ATCATCAAAT GAGTTCTGTT GGGAACTAAT TTAGGGAGAC AGGAAACAGT CATTTTAGGA
  AGTGCTTCTA ACTACATATA TATTTGGTTT TCTCACTAGA ATTGTCTGTG ATCTCCCTAT
  TGGAAAGGTA GAGCCAAGTA TATTATTCAC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321193477	CHEV_4_84852950	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264831046					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85125283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14412	CpG island 14412	744 bp distal
Rr376767	regulatory region 376767	715 bp upstream
Rr594659	regulatory region 594659	1501 bp distal
Rr594660	regulatory region 594660	432 bp distal
Rr594661	regulatory region 594661	1364 bp distal
Rr594662	regulatory region 594662	666 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	Intron
Tssr37705	transcription start site region 37705	1915 bp downstream
Tssr37706	transcription start site region 37706	1897 bp downstream
Tssr37707	transcription start site region 37707	1854 bp downstream
Tssr37708	transcription start site region 37708	1818 bp downstream
Tssr37709	transcription start site region 37709	1551 bp downstream
Tssr37710	transcription start site region 37710	1530 bp downstream
Tssr37711	transcription start site region 37711	1524 bp downstream
Tssr37712	transcription start site region 37712	1361 bp downstream