rs264843940 SNP Detail

Summary

• ID
  rs264843940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17845899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCTGTCC TCACTGCCAT
  AGAAAGTGCT GGGGTTAGTA GGGGGATTCT TCAGAATTGG CTCATTGTAG ATGTGAGATA
  GCTATCTACA CTGCCCACAG CTGTATGAAG ATACAATAGA GACAGGACGA TCTCCCAGAG
  GAGTATTGTT CCGTTCTTTC TCTCTTTTTC CTTGGAGTAT CAATTTTATA AATTTTCTTG
  R
  TCTAGCTAAG CCATATTCAA AAGTAAACAA AGATGACTCT ACAAGACTAA AGAGCTCTGT
  GTTACTTTTC TTAGCCAGAG GGGAGAGGGT GAGACAAAGT GGGCAGATGA AAATTTTATA
  TCCTATTTAT TAAAGATCTT TGTATAGGTG CATTGAGCGA TCGTTTGTCA GTTCAGAAAT
  AATGAAATGT AGCCCTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357118690	MGP_WTSI_3_17691735	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264843940					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357118690	MGP_WTSI_3_17691735	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17845899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12995	CpG island 12995	1054 bp distal
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Rr573846	regulatory region 573846	1673 bp distal
Rr573847	regulatory region 573847	1503 bp distal
Rr573848	regulatory region 573848	968 bp distal
Rr573849	regulatory region 573849	33 bp proximal
Rr573850	regulatory region 573850	885 bp proximal
Rr573851	regulatory region 573851	1495 bp proximal
Tssr28480	transcription start site region 28480	1972 bp downstream
Tssr28481	transcription start site region 28481	1780 bp downstream
Tssr28482	transcription start site region 28482	1763 bp downstream
Tssr28483	transcription start site region 28483	1667 bp downstream
Tssr28484	transcription start site region 28484	1601 bp downstream