rs264851682 SNP Detail

Summary

• ID
  rs264851682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127688122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCAGGAAA ACGGCCACTG
  CCTCCTTTCA ACCTAACTAG TTTTGCTTCC ATTTTGGTTT CTGTCATTGA TTTTCTATGG
  AAAAATTCTG TGTAAATTTT AAATAGTTTA GAAAGGAATT TTCCAGAATT ATTCAATTTA
  TAATTTGGAG TTCTGGTATC CTTAAAACCA ATCCAAAAAG AAGAACAGGA GAATATCTCC
  R
  TGATGAAAAA TTAAAATGAC TTTTTGGAAT GTTTTATGTT GTTAACTCTA ATTCTCCTTC
  AGATAGTATG TGTACAAAAA CAGCTCTATC TATGTGACAT TGCATGGATT TTTAAATTTC
  ATTTGCAGGT TGTAAAAAAA AAAAAAAAAA AAAAAACCAA AACAAAACCC TAGATGATAG
  GCTTTGTGAT ACTGTTGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320957983	CHEV_3_127597391	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264851682					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127688122 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1241 bp proximal
Fam241a	family with sequence similarity 241, member A	Intron
Rr398009	regulatory region 398009	1800 bp upstream
Rr584895	regulatory region 584895	166 bp distal
Rr584896	regulatory region 584896	1525 bp proximal
Rr584897	regulatory region 584897	1805 bp proximal
Tssr35606	transcription start site region 35606	131 bp downstream
Tssr35607	transcription start site region 35607	1035 bp downstream
Tssr35608	transcription start site region 35608	1747 bp downstream
Tssr35609	transcription start site region 35609	1774 bp downstream
Tssr35610	transcription start site region 35610	1798 bp downstream