rs264852991 SNP Detail

Summary

• ID
  rs264852991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:80201769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATATCCT GACAGCGAAG
  ATCAAACTTG CCCCAAGGAC ACCCCTAATC AGCAGGAAGT AGTCTAACGA TAGAGTTGCC
  CCTTTCCCAC CCCTGACTTT ATTCAGGGAT CTCTTTCCTC TCTCTTATCT AGGGGGTGGA
  AAGTGTGGCA GAAAGGGGTG GAGAAGGGTG GAAGAAAGAA ACCACAAAGT AGCCAAAGGC
  R
  ATAGTCCCAA GACACTCTCT CATCTCTTCT CAGTGTCCAA TAGCATAAAA CATGCTCTTA
  CCCATGACTG AATCAAACTT ATGCTTTTCC TATTGCATAC ATCAAGTATG TTGACACTAC
  ATCTCAAACT GTTCTCACAC ACACACACAC ACACACACAC ACACACGGAT TCCAAAACAA
  ATCAGCCACC TAAGGTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399169362	MGP_WTSI_17_80293680	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	A	G	G	A	A	A	A	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264852991					SNP	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	A	G	G	A	A	A	A	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399169362	MGP_WTSI_17_80293680	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:80201769 () rs orientation: forward

Symbol	Name	Function Class
Atl2	atlastin GTPase 2	within coordinates
Cpgi9524	CpG island 9524	473 bp proximal
Rr333287	regulatory region 333287	1969 bp distal
Rr340218	regulatory region 340218	within coordinates
Rr405462	regulatory region 405462	1608 bp upstream
Tssr149462	transcription start site region 149462	1617 bp downstream
Tssr149463	transcription start site region 149463	1655 bp downstream
Tssr149464	transcription start site region 149464	1688 bp downstream