rs264857988 SNP Detail

Summary

• ID
  rs264857988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24035379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTTGTGA GACGTGGAAG
  ATCTCACTCT AGAACACCAC AAAGAAGAGG ACGATCTGGC TCATCCTCAG AGAGGAAGAA
  CAAATCTAGA ACATCTCAGA GGAGAAGCAG ATCCAACTCA AGCCCAGAAA TGAAAAAATC
  TCACGTTTCC TCAAGACGGA GCAGGTCTCT TTCTTCACCA CGATCCAAAG CAAAATCTTT
  R
  AGGCGAAGCC TTTCAGGTTC CTCTCCATGT CCTAAACAAA AGTCACAGAC ACCAACCAGG
  CGAAGTCGTT CTGGTTCTTC ACCACCTAAA CAAAAGTCAA AAACACCACC AAGACAGAGT
  CGTTCAAATT CTCCTCAGCC TAAAGTAAAA TCTGGAACAC CACCAAGACC AGGGTCTGTA
  ACAAACATGC AGGCTGATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397842733	MGP_WTSI_17_23953372	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264857988					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397842733	MGP_WTSI_17_23953372	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24035379 () rs orientation: forward

Symbol	Name	Function Class
Rr340683	regulatory region 340683	within coordinates
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142965	transcription start site region 142965	1214 bp downstream
Tssr142966	transcription start site region 142966	1167 bp downstream
Tssr142967	transcription start site region 142967	1121 bp downstream
Tssr142968	transcription start site region 142968	1100 bp downstream
Tssr142969	transcription start site region 142969	338 bp downstream
Tssr142970	transcription start site region 142970	304 bp downstream
Tssr142971	transcription start site region 142971	235 bp downstream
Tssr142972	transcription start site region 142972	197 bp downstream
Tssr142973	transcription start site region 142973	174 bp downstream
Tssr142974	transcription start site region 142974	136 bp downstream
Tssr142975	transcription start site region 142975	116 bp downstream
Tssr142976	transcription start site region 142976	87 bp downstream
Tssr142977	transcription start site region 142977	30 bp downstream
Tssr142978	transcription start site region 142978	within coordinates
Tssr146670	transcription start site region 146670	1135 bp upstream