rs264867871 SNP Detail

Summary

• ID
  rs264867871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86236611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTC GCTAAGCAGC TTTGACTCTC
  R
  GGGTTGGGTA TATTCTCTGG AGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	PL/J	PWK/PhJ	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
ss914776466	MGP_WTSI_1_86308889	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	PL/J	PWK/PhJ	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
rs264867871					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914776466	MGP_WTSI_1_86308889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86236611 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	1584 bp downstream
Rr366828	regulatory region 366828	within coordinates
Rr414520	regulatory region 414520	849 bp distal
Rr414521	regulatory region 414521	1217 bp proximal
Rr414522	regulatory region 414522	1776 bp proximal
Tssr7740	transcription start site region 7740	311 bp downstream
Tssr12766	transcription start site region 12766	486 bp upstream