rs264877423 SNP Detail

Summary

• ID
  rs264877423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127871645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCTGGTC CCGCCCTCTC
  GGCGCCCGGC TTCCTTCTGC AACAGGCGTG GGTCACGGGC TCGCTCGTTC TCTTTCTGCC
  GCCATCTTGG TTCCGTGATC TCCGCACAGT AAGTGCCGCT GGCGTCTCTG CTTTCCATCC
  GTAGCCATCC TCGCCTGCTG CCAGCTTTGC GGCACCGGGC ATTTAAGTTT AACATCGCTG
  R
  CGGCTCTGTG GGGCTCAGCG TTCTTAGCTC GCCCCCGCGC CTGCGGGCAA AATGGGGTCT
  GCGCTTTGGG TCCCAGCAAC AGCAGGACAG GAGGGCCCCG GGTCCGGCTC CCGGTTTAAG
  GCGTGGGGAC GCGGGAACCA TTGCGGTGGA GCCGGAGAGG CTGGGCGCGT CTGCAGTTGG
  GAAGGGCGCC ACGGGGATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382196998	MGP_WTSI_10_127472832	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264877423					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382196998	MGP_WTSI_10_127472832	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127871645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2380	CpG island 2380	within coordinates
Gm66417	predicted gene, 66417	195 bp upstream
Gm66418	predicted gene, 66418	1736 bp downstream
Naca	nascent polypeptide-associated complex alpha polypeptide	within coordinates
Rr224438	regulatory region 224438	within coordinates
Rr385474	regulatory region 385474	within coordinates
Tssr96290	transcription start site region 96290	438 bp downstream
Tssr96291	transcription start site region 96291	421 bp downstream
Tssr96292	transcription start site region 96292	396 bp downstream
Tssr96293	transcription start site region 96293	256 bp downstream
Tssr96294	transcription start site region 96294	182 bp downstream
Tssr96295	transcription start site region 96295	163 bp downstream
Tssr96296	transcription start site region 96296	141 bp downstream
Tssr96297	transcription start site region 96297	121 bp downstream
Tssr96298	transcription start site region 96298	442 bp upstream