rs264879168 SNP Detail

Summary

• ID
  rs264879168
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19192437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGGGAAG CGTTGGTCTG
  GGCTGTGGAG CCCGGAAAGG AGTCGAGACT GGCGGGGTCA GTGGTCCGGG AGGGCGAGGG
  GTTCTATGGC TGGACTCAGG CAGGGCTCCC CAAGGGGCTG GGCCCCACTC ACCGTGTCCG
  AGTTTCGATC GTTGCCCGGG GCCAGCGCCG TCCTCGAAGA CATCTTCTCT GGGGTCCCAG
  R
  AGGGAAAGGG ACAGGGGCGG CCGGGCGGGG GGGGTGGGGA TCCCGGGGTC CCCTCTCTTC
  CCCTCCCCCC CCCCAGCCGA CCTGGGGACG CGAGCTCAAA AGCTGGGCGC CGTGGACGCC
  CGAGTCCTCG CAGAGCGAGA GCAAGAGAGG GCAGGACGGG GGAGGGGAGA AGACACCGAG
  GGTCCTAGTG GCCCCGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370749828	MGP_WTSI_7_20043861	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	A	A	G	A	G	G	A	A	A	A	G	G	A	G	A	A	A	G	A	A	G	A	G	A	A	G	A	G	A	A	G	A	A	G	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264879168					SNP	G	A	A	A	A	A	G	A	G	G	A	A	A	A	G	G	A	G	A	A	A	G	A	A	G	A	G	A	A	G	A	G	A	A	G	A	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370749828	MGP_WTSI_7_20043861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19192437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	within coordinates
Mark4	MAP/microtubule affinity regulating kinase 4	within coordinates
Rr400149	regulatory region 400149	244 bp upstream
Rr643146	regulatory region 643146	within coordinates
Rr643147	regulatory region 643147	299 bp proximal
Tssr64858	transcription start site region 64858	418 bp upstream
Tssr70918	transcription start site region 70918	160 bp downstream
Tssr70919	transcription start site region 70919	216 bp downstream
Tssr70920	transcription start site region 70920	236 bp downstream
Tssr70921	transcription start site region 70921	267 bp downstream
Tssr70922	transcription start site region 70922	289 bp downstream
Tssr70923	transcription start site region 70923	723 bp downstream