rs264898440 SNP Detail

Summary

• ID
  rs264898440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115520076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCAGTGG TTTATTTGTT
  ACAGTTTAAG AGTTAATCTT AGCCAGGCGT GGTGGCGCAC GCCTTTAATC CCAGCACTCA
  GGAGGCAGAG GCAGGAGGAT TTCTGAGTTC GCGGCCAGCC TGATCTACAA AGTAAGTTTC
  AGGACAGCCA GGGCTATACA TATATATATA TAACCATATA TATATATATA ACCCTGTCTC
  R
  AAAAACCAAA AAAAAAAAAA GAGTTAATCT TTTTTAAAGA TTTATTTATT TTATGTACAT
  AAATGCACTG TAGTTGTCTT CAGACACACC AGAAGAGGGC ATCGGATCCC ATTACAGATG
  GTTGTGAACT ATCATGTGGT TGTGGGAATT GAACTCAGAA CCTTTGGAAA AGCCGTCATC
  TTTTTGTTGA GCCATCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323863461	CHEV_11_115490564	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264898440					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115520076 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	771 bp distal
Gm74427	predicted gene, 74427	255 bp downstream
Rr246115	regulatory region 246115	75 bp distal
Rr369445	regulatory region 369445	within coordinates
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	955 bp upstream
Tssr105892	transcription start site region 105892	827 bp downstream
Tssr111780	transcription start site region 111780	1541 bp upstream
Tssr111781	transcription start site region 111781	1512 bp upstream
Tssr111782	transcription start site region 111782	1491 bp upstream
Tssr111783	transcription start site region 111783	1459 bp upstream
Tssr111784	transcription start site region 111784	1128 bp upstream
Tssr111785	transcription start site region 111785	1086 bp upstream
Tssr111786	transcription start site region 111786	1000 bp upstream
Tssr111787	transcription start site region 111787	952 bp upstream