rs264902549 SNP Detail

Summary

• ID
  rs264902549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8896624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGAATT GCGGACATGT
  ACCACTACCC CAGGTTTTTT TGGTGATAGA AACTAGTGCA CATGCTGGCC AGTGGTGGTG
  TATGCCCCTT AAATCCCAGC AGAGGTAGAC AGATCTCTTG AGTTTGCCTA GCTAGCAAAG
  TGAGTTCCAG AACAGTCAGG GTGGTTAAAT AGAGAAACTG AAACCTTGTT TTGGGCGGGG
  R
  TGGGGGTTTG GGGGTAGGGG TGGGACAAAG AAAAACTGCA TATTAGACAA GCTACTTCCT
  GGACTAAATA TGTAAATTGT TACATATCCG TGAATAAAGT ATCATTGTTG TAGTGTAGAC
  TTGGTACCCA CTTTTAGCTC TGTAGTCACT TGCTGAAGAG AGGTGACCCT GAAGAAACTA
  CAGCTCGTGG AGCGGAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss401710281	MGP_WTSI_19_8993750	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs264902549					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401710281	MGP_WTSI_19_8993750	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8896624 () rs orientation: forward

Symbol	Name	Function Class
B3gat3	beta-1,3-glucuronyltransferase 3	1116 bp upstream
Cpgi10585	CpG island 10585	825 bp proximal
Gm36629	predicted gene, 36629	within coordinates
Rr394095	regulatory region 394095	1061 bp downstream
Rr543846	regulatory region 543846	148 bp proximal
Rr543847	regulatory region 543847	624 bp proximal
Rr543848	regulatory region 543848	1125 bp proximal
Tssr154878	transcription start site region 154878	1098 bp upstream
Tssr154879	transcription start site region 154879	1172 bp upstream
Tssr154880	transcription start site region 154880	1201 bp upstream
Tssr154881	transcription start site region 154881	1236 bp upstream