rs264909271 SNP Detail

Summary

• ID
  rs264909271
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78072565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATGGCT GACTCCGTGG
  TCAGTGGGAA TTTGATGATA GCATAGTGGT CAAGCCTAGG GAGAGATGGG AGAGGAAAAT
  GGAGTTAGCT GCCCTGGTGC CAGCATTCAA CACATGGTTT ACTTTAGAAC CAGACTAGGA
  AAGAATAGGT GCATCAGACA ATAGATCACA ATCATCTTTA TCAGACTTTG GTCGCTAAAT
  M
  ATGTCATCAC ATGCACCCAA ACCACTATGG GCTCAACTTC CCATTTACAG TCAAATCCTG
  TATATTCTCT TGACTAAAGA ATCAAGTTTA ATTTATGCAT TTATCCACTG GAGTTCCACA
  TTTACTATTA TGAGACCAGA TCAAATAAAT AACTATAGAG AAAATTGTGC TCAATTGCTA
  GAGGTTGGCT ACACCCCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383952669	MGP_WTSI_11_77995241	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264909271					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383952669	MGP_WTSI_11_77995241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78072565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3335	CpG island 3335	1400 bp proximal
Rpl23a	ribosomal protein L23A	within coordinates
Rr402760	regulatory region 402760	1699 bp upstream
Rr451902	regulatory region 451902	1285 bp proximal
Rr451903	regulatory region 451903	1505 bp proximal
Rr451904	regulatory region 451904	1835 bp proximal
Snord4a	small nucleolar RNA, C/D box 4A	within coordinates
Snord42a	small nucleolar RNA, C/D box 42A	393 bp upstream
Snord42b	small nucleolar RNA, C/D box 42B	1320 bp downstream
Tlcd1	TLC domain containing 1	919 bp downstream
Tssr109378	transcription start site region 109378	1433 bp downstream
Tssr109379	transcription start site region 109379	1812 bp downstream