rs264942752 SNP Detail

Summary

• ID
  rs264942752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3031139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCAGGT TTCTCGCCAT
  ATTCCAGGTC CTACAGTGTG CATTTCTCAT TTTTCACGTT TTTCAGTGAT TTTGTCATTT
  TTCAAGTTGT CAAGTGGATG TTTCTCATTT TCCTTGATTT TCACTTTTCT TGCCATATTC
  CAAGTCTTAC AGGGGCATTT CTCATTTTTC ACGTTTTCAG TGATTTTGTC ATTTTCAATT
  Y
  GTCAACTGCA TGTTTCTCAT TTTCCATGAT TTTCAGTTTT TTTGCCATAT TCCATGTCCT
  ACAGGGGAAA TTTCTATATT TTCCACCTTT TTCAGTTTTC CTCGCCATAT TTCATGTCCT
  AAAGTGTGTA TTTCTCATTT TCCGTGATTT TCAGTTTTCT TGCCATATTC CAGGTCCTAC
  AGTGTGCATT TCTCATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	PWK/PhJ
ss376472669	MGP_WTSI_9_3031139	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	PWK/PhJ
rs264942752					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376472669	MGP_WTSI_9_3031139	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3031139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21325	CpG island 21325	1429 bp distal
Cpgi21326	CpG island 21326	748 bp proximal
Cpgi21327	CpG island 21327	1212 bp proximal
Rr673610	regulatory region 673610	1099 bp distal
Rr673611	regulatory region 673611	within coordinates
Rr673612	regulatory region 673612	992 bp proximal
Rr673613	regulatory region 673613	1652 bp proximal
Tssr83588	transcription start site region 83588	1744 bp downstream
Tssr83589	transcription start site region 83589	1463 bp downstream
Tssr83590	transcription start site region 83590	963 bp downstream
Tssr83591	transcription start site region 83591	42 bp downstream
Tssr83592	transcription start site region 83592	25 bp downstream
Tssr83593	transcription start site region 83593	745 bp upstream
Tssr83594	transcription start site region 83594	860 bp upstream
Tssr83595	transcription start site region 83595	1208 bp upstream
Tssr83596	transcription start site region 83596	1296 bp upstream
Tssr88023	transcription start site region 88023	1719 bp upstream
Tssr88024	transcription start site region 88024	772 bp downstream