rs264943094 SNP Detail

Summary

• ID
  rs264943094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:107263863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTCACTA CAGACAGCTG
  AGCACAGAGC CTTTGCATGT AACCACCATT CCCACTACAC CCACATCAAA GATCACTTTC
  ATAATCAGTC ATAGCCAAAG GCCACACATT AAGGGTTGGG CAAGGGAGAA AAGCTGTGTT
  AGGGGGAGCT CTCAAAGAAG ATGTCAAAAT ATGAGGAGAG GGGGTGTGGC GTCTGGGGAG
  Y
  CTTAAAGGGG CACGCTGGAG AGCCAGCATG TGACCCACTC CATGCTTTCC AGGGCTCCTT
  CTGACCTGGA GCCACTCCCC ACGTCTCATG GAAACTCACC CTTCCTATCT CCCTGCTCTG
  TGAAGCAGGT CCTGCAGAGG TGAAAAGAGC AGGGAGGCAG ACCCAGGACT TTACTGAGGC
  AGTAATCCCT GGTGTGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372647176	MGP_WTSI_7_114808170	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264943094					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372647176	MGP_WTSI_7_114808170	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107263863 () rs orientation: forward

Symbol	Name	Function Class
Ppfibp2	PTPRF interacting protein, binding protein 2 (liprin beta 2)	within coordinates
Rr166477	regulatory region 166477	137 bp proximal
Rr400538	regulatory region 400538	within coordinates
Tssr2361	transcription start site region 2361	708 bp upstream
Tssr68430	transcription start site region 68430	22 bp upstream
Tssr68431	transcription start site region 68431	111 bp upstream
Tssr68432	transcription start site region 68432	128 bp upstream
Tssr68433	transcription start site region 68433	253 bp upstream
Tssr68434	transcription start site region 68434	276 bp upstream
Tssr68435	transcription start site region 68435	345 bp upstream
Tssr68436	transcription start site region 68436	929 bp upstream
Tssr68437	transcription start site region 68437	1024 bp upstream
Tssr68438	transcription start site region 68438	1163 bp upstream
Tssr68439	transcription start site region 68439	1530 bp upstream