rs264946040 SNP Detail

Summary

• ID
  rs264946040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31971904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGTGGAC ACCAAAGACT
  TCGAGAGACA GTGTCGGTGA GCCACCACAG GGGTCAAGCC AGGGACTGTG TGTGTGTGTG
  TGGTGTCCCC ACACCCCCAC CAACCACTGG GTCTCAGCAG CTGCTTTCAC CACAGTCCCC
  ACGAGCTTGC CTTCCACAGG GAGGAATGGC CTTCTTTGGG GCCAGAGAGC ATGCAGAACA
  R
  GACCCAAGGG CTCCAGGGTC CCATGTAGAT CTATCTCATT CTAAGAGACC AAACCACAGA
  GATGAAACCA ATGTGTCCCT CTAGCCGCTC CTAGTCAGGG CCCCACCGGA GGGACACTGG
  ATGCTGACCC TTGACCTCCA GTGGGAGCAA AGCTGCACAC TGCAGAGCAA ACTGGGTTTC
  TGAAGTCCCT TTCAAACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353550835	MGP_WTSI_2_31937412	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264946040					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353550835	MGP_WTSI_2_31937412	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31971904 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700020L05Rik	RIKEN cDNA 1700020L05 gene			470 bp upstream
Cpgi11492	CpG island 11492			706 bp proximal
Cpgi11493	CpG island 11493			1241 bp proximal
Fam78a	family with sequence similarity 78, member A			Intron
				Noncoding-Transcript-Variant
Rr396884	regulatory region 396884			364 bp downstream
Rr554792	regulatory region 554792			1708 bp distal
Rr554793	regulatory region 554793			662 bp distal
Rr554794	regulatory region 554794			513 bp distal
Rr554795	regulatory region 554795			131 bp proximal
Rr554796	regulatory region 554796			1853 bp proximal
Rr554797	regulatory region 554797			1881 bp proximal
Tssr17241	transcription start site region 17241			330 bp downstream
Tssr17242	transcription start site region 17242			271 bp downstream
Tssr17243	transcription start site region 17243			1387 bp upstream
Tssr17244	transcription start site region 17244			1975 bp upstream
Tssr23455	transcription start site region 23455			1328 bp downstream
Tssr23456	transcription start site region 23456			1412 bp downstream
Tssr23457	transcription start site region 23457			1729 bp downstream
Tssr23458	transcription start site region 23458			1758 bp downstream
Tssr23459	transcription start site region 23459			1891 bp downstream