rs264948949 SNP Detail

Summary

• ID
  rs264948949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:65715176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGACAAGA GAAGGAGGGG
  GAAATCAGTG TCTGCGGTGG GCTTCGGGGT GGAGGGGAAG AGGGATATGA GCCCTGAGGG
  GCTGTGGGGG GCTCGTGTGG TTAGCATTTC CAGGGTCCTG TGCTTGTGTG GAGGGGGCAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACAATG ACCTTTCCCT
  Y
  CTCAGGAAGC CCTAAAAGGG AGAGGCAACC CCCAGCAAGC TCCCACCCTG TGCTGATTCT
  CAGGGACTTG TTGGCAACTC AGCGAGGGTT GCCATAGCTT TTTTATGTAG GGTGACCAGA
  ACCGGCTGAA ACTGGTTTGA GGCAGATCAG CTCCTGAACA CAATGCAGTC ACTGAGCTAC
  CACAGTGGGA TAGCAGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400989046	MGP_WTSI_18_65741759	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264948949					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400989046	MGP_WTSI_18_65741759	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65715176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10151	CpG island 10151	322 bp distal
Gm41760	predicted gene, 41760	1361 bp upstream
Rr353047	regulatory region 353047	within coordinates
Tssr151678	transcription start site region 151678	1705 bp downstream
Tssr151679	transcription start site region 151679	1307 bp downstream
Tssr151680	transcription start site region 151680	1288 bp downstream
Tssr151681	transcription start site region 151681	344 bp downstream
Tssr151682	transcription start site region 151682	152 bp upstream
Tssr151683	transcription start site region 151683	176 bp upstream
Tssr151684	transcription start site region 151684	243 bp upstream
Tssr151685	transcription start site region 151685	285 bp upstream
Tssr151686	transcription start site region 151686	1077 bp upstream
Tssr153709	transcription start site region 153709	53 bp downstream
Zfp532	zinc finger protein 532	within coordinates