rs264967633 SNP Detail

Summary

• ID
  rs264967633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15198691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCAAGC CAGGTGTGAA
  ACAAGTTATA ACAAGTCCCT GTCTCACAGG TTTCCTCCCG CTCCTTTGGG AAACAATACA
  CACACACACA AACACACACA CACACACACA CACACACAAG CACACGCGCG CCCTCTTATT
  ACATCTGTCC GAGGAGAAGA GGATCTTGGA GGTTATACTT CTGGGGAATT CTTCTCTAAG
  Y
  GCTACTAGAG AAGCTGTCAG ATTTGTCATG GCATTCTGTT CTTCGTCTCA GCTCTGGATA
  TATGTAAAGA AATGTACTAG CTTCCCAGAG CTTGTAGCAG TGGGCAACTA AGTGGACACA
  CATGGCTCGG AGCTCAGCTC AAGAGCCAGC CCAGACTAGT TGCCCACCGC CACTTCTGGT
  GTGCCTGCAT TTTGTCCCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325532717	CHEV_18_15224143	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264967633					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15198691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9734	CpG island 9734	464 bp distal
Gm58434	predicted gene, 58434	within coordinates
Kctd1	potassium channel tetramerisation domain containing 1	within coordinates
Rr393314	regulatory region 393314	within coordinates
Rr534350	regulatory region 534350	1620 bp distal
Tssr152511	transcription start site region 152511	1979 bp upstream
Tssr152512	transcription start site region 152512	1520 bp upstream
Tssr152513	transcription start site region 152513	1494 bp upstream
Tssr152514	transcription start site region 152514	1479 bp upstream
Tssr152515	transcription start site region 152515	1408 bp upstream
Tssr152516	transcription start site region 152516	1299 bp upstream
Tssr152517	transcription start site region 152517	1278 bp upstream
Tssr152518	transcription start site region 152518	1260 bp upstream
Tssr152519	transcription start site region 152519	1191 bp upstream
Tssr152520	transcription start site region 152520	1158 bp upstream