rs264995378 SNP Detail

Summary

• ID
  rs264995378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108817095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTTAGGT TCTCCGCAAA
  GGCAAAAAAT GCTTAGTCCA TGGGGCATCT CCCACCCCCC CATTTTAGTT TTAAAAATGA
  ATTTAAACAT ACTTTCTAAT ATAATAAGTT TTTCAGAATA CATTTGAAAT TAAGTTGAAA
  TATTAGTCTC TATTTTAAAA CAACCTGTCA CAAAGGTACA GGGACCCAAA TTTTCAAAGT
  Y
  AACTGCATCC ACAATCATCA CTCACCATGC TGCATCCACA CTGAAAAGGC CTTACCTTTT
  AAAAGCTAGT TTAAAAAAAC TACTTCATAG TATTAGTTAC ACCTACTTAA TAGCTTTTGT
  AAAAGAACAC CAAGAGTACG TGTATATTTT ATATATACAA AGTTAAAAGG TTTGTCTATA
  AAAAGCAATT AGTACCTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359176069	MGP_WTSI_3_108712697	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs264995378					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359176069	MGP_WTSI_3_108712697	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108817095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13711	CpG island 13711	969 bp proximal
Gm56806	predicted gene, 56806	1703 bp upstream
Prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	within coordinates
Rr77092	regulatory region 77092	within coordinates
Rr397945	regulatory region 397945	1790 bp upstream
Tssr35199	transcription start site region 35199	1955 bp upstream
Tssr35200	transcription start site region 35200	1713 bp upstream
Tssr35201	transcription start site region 35201	1690 bp upstream
Tssr35202	transcription start site region 35202	1673 bp downstream
Tssr35203	transcription start site region 35203	1891 bp downstream
Tssr35204	transcription start site region 35204	1908 bp downstream