rs265004383 SNP Detail

Summary

• ID
  rs265004383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127585354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGGCCA CTGGAAGACT
  CTCAGGTGAG TGTGTGCATC TTGGTATCCA GCACGCAAAG GGTTAAGCCT GGAGAGTTGG
  GGGGGGGGGG GTTGGAGGAA TTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTAGGG GGGGGTGAAG AGCCATGCCT TTGGCTCCTG TCTGTAGCTT TTCATTTCCT
  Y
  TCTTTCCTTG TTCTATAATA GTTTCTTTGT TAACCGATTA TTACTGTTCC CCAGATGTTC
  ATGTTTGACA ACTTTGTGAT GTCAGATAAC AGAGTAATAT ACTGTGTAAC ACACGCATTG
  CCAAATGATA CTTTACTATC GCTAATTCTA TTTTATTCCA CAAAAATATG ATGGCTTATG
  GGTTTTGTAA AGAAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359647266	MGP_WTSI_3_127494623	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265004383					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359647266	MGP_WTSI_3_127494623	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127585354 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13800	CpG island 13800			1577 bp distal
Cpgi13801	CpG island 13801			756 bp distal
Gm56817	predicted gene, 56817			1448 bp upstream
Gm65225	predicted gene, 65225			within coordinates
Rr398007	regulatory region 398007			1832 bp upstream
Rr584860	regulatory region 584860			1783 bp distal
Rr584861	regulatory region 584861			1886 bp distal
Rr584862	regulatory region 584862			1459 bp distal
Rr584863	regulatory region 584863			891 bp distal
Rr584864	regulatory region 584864			within coordinates
Tifa	TRAF-interacting protein with forkhead-associated domain			Intron
				Noncoding-Transcript-Variant
Tssr31599	transcription start site region 31599			1896 bp downstream
Tssr31600	transcription start site region 31600			1828 bp downstream
Tssr31601	transcription start site region 31601			1776 bp downstream
Tssr31602	transcription start site region 31602			1722 bp downstream
Tssr31603	transcription start site region 31603			1704 bp downstream
Tssr31604	transcription start site region 31604			1580 bp downstream
Tssr31605	transcription start site region 31605			1066 bp downstream
Tssr31606	transcription start site region 31606			880 bp downstream
Tssr31607	transcription start site region 31607			656 bp downstream
Tssr31608	transcription start site region 31608			560 bp downstream
Tssr31609	transcription start site region 31609			521 bp downstream
Tssr31610	transcription start site region 31610			428 bp downstream
Tssr31611	transcription start site region 31611			315 bp downstream
Tssr35598	transcription start site region 35598			1947 bp upstream
Tssr35599	transcription start site region 35599			1865 bp upstream
Tssr35600	transcription start site region 35600			1837 bp upstream
Tssr35601	transcription start site region 35601			1804 bp upstream
Tssr35602	transcription start site region 35602			1487 bp upstream