rs265004978 SNP Detail

Summary

• ID
  rs265004978
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102488089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCCTGGA GGGGAAAAGA
  AGGAGAAAAG AAACTAGAAT GCTGGAGTTC TGAGATGCTG CTCAGAGGAG CCTAGCAGGT
  CCCAAGTGAC CTGCTCACAC CTTTTGACAT CTTTGTTTAC ACTTTTAAAC CTCTCAGTAG
  AGTCTGTTTA ATTCTTATCT GGGCCCTGCA GAGGTGATAG GTTTGAGTCC CAATGTCCAG
  S
  AGAGGAAAAG AAGGTTTTGC CTTTTAGGTG GCCACGGGGT CAGCAGGTGG AGGACCTGTA
  GGTGTCTGGT GTGTCCCAGT CCTCGAGATA ATAAAAGCTG AGCAGAACTT GTCATTATTA
  TGCAAAGCTG GGCAGGAGGC TTGGACTCTC CCTCGCAGAA GGCAGAAGCC CATCTGTCTT
  TGCACGCCTC CCCCCACGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320439888	CHEV_2_102497901	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265004978					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102488089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	850 bp proximal
Gm57687	predicted gene, 57687	1956 bp upstream
Rr561712	regulatory region 561712	1079 bp distal
Rr561713	regulatory region 561713	425 bp proximal
Rr561714	regulatory region 561714	1047 bp proximal
Rr561715	regulatory region 561715	1047 bp proximal
Rr561716	regulatory region 561716	1548 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	915 bp upstream
Tssr19098	transcription start site region 19098	484 bp upstream
Tssr19099	transcription start site region 19099	536 bp upstream
Tssr19100	transcription start site region 19100	832 bp upstream
Tssr19101	transcription start site region 19101	896 bp upstream
Tssr19102	transcription start site region 19102	933 bp upstream
Tssr19103	transcription start site region 19103	982 bp upstream
Tssr19104	transcription start site region 19104	1008 bp upstream
Tssr19105	transcription start site region 19105	1074 bp upstream
Tssr19106	transcription start site region 19106	1099 bp upstream
Tssr19107	transcription start site region 19107	1110 bp upstream
Tssr19108	transcription start site region 19108	1153 bp upstream
Tssr19109	transcription start site region 19109	1189 bp upstream
Tssr19110	transcription start site region 19110	1469 bp upstream