rs265014780 SNP Detail

Summary

• ID
  rs265014780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148782744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTAATCT ACATTTAATA
  GGCAAGGTAT AGGCGGAAAT TTAACGTGTC AGTAAACTCC AAACAAGAAC TGAACTAGCC
  TTACCTTGTC AGAAGTCCTC GGTCCACACA GAACACCACT TATTACCTCC CTTCAATCTG
  AGGCAAGTGG TCCAAGAGAA GGAGATGTAA GCCTTCGGAA GAGGCTTCTG GCCAGACCAG
  Y
  CACAACACCA CTACTGGGAT CCTCCGAAGC CTGCCCTTCT GGCCCGTCAT GAATTTCCTA
  CGCAGACAGG TGTCATATTG GCATGAATTT CGTTGCCAAG TACATTTTTA AGAGGTGGGC
  GTGGCTGTCA TCCTGTAGCC GGTCCCACTA GTCTTTAAAC TCTCTTAACC CTCTCTGCTT
  TTAATATTTC GCACAGGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321017236	CHEV_3_148740072	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265014780					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148782744 () rs orientation: forward

Symbol	Name	Function Class
Rr587252	regulatory region 587252	881 bp distal
Rr587253	regulatory region 587253	within coordinates
Rr587254	regulatory region 587254	1847 bp proximal
Tssr36091	transcription start site region 36091	8 bp upstream
Tssr36092	transcription start site region 36092	6 bp downstream
Tssr36093	transcription start site region 36093	43 bp downstream
Tssr36094	transcription start site region 36094	71 bp downstream
Tssr36095	transcription start site region 36095	128 bp downstream
Tssr36096	transcription start site region 36096	233 bp downstream