rs265015548 SNP Detail

Summary

• ID
  rs265015548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122826074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTCCTTG GAGGCAGAGG
  CACACTGATC TCTGAGTTTC AGGCCAGTTT GGTCTACAGA ATGAGTTTCA GGACAGCCAG
  GGCTACTGTC TTGAAAAAAC AGTAAACCAA GCAACCAAGC AACCAACCAA CCAACCAACC
  AACCAACCAA GCAACCAACC AACCAACCAA CCAACCAACC AACCAACCAA CCAACACAAG
  R
  AGCCAAACCA ACAAACAAAA AGAAATGGAA CATAGATGGC TCTATGAACA AGCAGAATAC
  ACAGGGAAGA GAGAGCTCCA AGCTACAACT TCTAAAACAC TCCAGGAGTA GGAAAGTGTT
  TATGTGTATC TGTGCTCACT TGCTCACATG AACACTGGAA TTATCTCAGG TTGCTTTTAG
  TGGGTGGCAT TTGGCACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914765	MGP_WTSI_6_122799133	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265015548					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914765	MGP_WTSI_6_122799133	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122826074 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58709	transcription start site region 58709	1139 bp downstream
Tssr58710	transcription start site region 58710	919 bp downstream
Tssr58711	transcription start site region 58711	1342 bp upstream
Tssr58712	transcription start site region 58712	1460 bp upstream
Tssr58713	transcription start site region 58713	1516 bp upstream
Tssr62966	transcription start site region 62966	1329 bp upstream
Tssr62967	transcription start site region 62967	1284 bp upstream
Tssr62968	transcription start site region 62968	1236 bp upstream
Tssr62969	transcription start site region 62969	916 bp upstream
Tssr62970	transcription start site region 62970	896 bp upstream
Tssr62971	transcription start site region 62971	836 bp upstream
Tssr62972	transcription start site region 62972	736 bp upstream
Tssr62973	transcription start site region 62973	675 bp upstream
Tssr62974	transcription start site region 62974	589 bp upstream
Tssr62975	transcription start site region 62975	504 bp upstream
Tssr62976	transcription start site region 62976	415 bp upstream
Tssr62977	transcription start site region 62977	357 bp upstream
Tssr62978	transcription start site region 62978	303 bp upstream
Tssr62979	transcription start site region 62979	270 bp upstream
Tssr62980	transcription start site region 62980	254 bp upstream
Tssr62981	transcription start site region 62981	235 bp upstream
Tssr62982	transcription start site region 62982	76 bp upstream
Tssr62983	transcription start site region 62983	371 bp downstream
Tssr62984	transcription start site region 62984	441 bp downstream
Tssr62985	transcription start site region 62985	484 bp downstream
Tssr62986	transcription start site region 62986	795 bp downstream
Tssr62987	transcription start site region 62987	925 bp downstream
Tssr62988	transcription start site region 62988	993 bp downstream
Tssr62989	transcription start site region 62989	1152 bp downstream
Tssr62990	transcription start site region 62990	1198 bp downstream
Tssr62991	transcription start site region 62991	1225 bp downstream
Tssr62992	transcription start site region 62992	1250 bp downstream
Tssr62993	transcription start site region 62993	1344 bp downstream
Tssr62994	transcription start site region 62994	1450 bp downstream
Tssr62995	transcription start site region 62995	1567 bp downstream
Tssr62996	transcription start site region 62996	1627 bp downstream
Tssr62997	transcription start site region 62997	1769 bp downstream
Tssr62998	transcription start site region 62998	1824 bp downstream
Tssr62999	transcription start site region 62999	1895 bp downstream
Tssr63000	transcription start site region 63000	1952 bp downstream
Tssr63001	transcription start site region 63001	1975 bp downstream