rs265056065 SNP Detail

Summary

• ID
  rs265056065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111578869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTTCTGG GAATGCTTTT
  TTGCAAAGTA AGATTAGTTT ACCAAAATAA TGCATAATGA TTTCTAAATA TGCCAAACTC
  AGAGCAGTGA GTAAAAAATG AACTCCAGTC CATAACTTTG TCATTGGCTG CTGCTTCCTC
  TCTTTGTAAC CAATGGATTA GCAGCCTGAC AGACTGCAGT TGCCTAGCAG GCTGGCTGCC
  Y
  TGGTCGCCAA TCCTTTGCTA AGAGGAAGTA CTCTGTTGTG ATTATAGCCC AAGGGAGTCA
  GAGACAGTTT ATTTCACTAT GCTGCTTTCT TAATATACAG TTTACTGAAG AAAATGGATA
  GCTGTATCGC CAAGGTATCC TGGTGCAAAT ATTCCTACTT TTATAAACAT TTGACTTACA
  ATATTTTATA GTTCCTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362843383	MGP_WTSI_4_111394277	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265056065					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362843383	MGP_WTSI_4_111394277	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111578869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14590	CpG island 14590	1262 bp distal
Gm33192	predicted gene, 33192	323 bp upstream
Rr597500	regulatory region 597500	1457 bp distal
Rr597501	regulatory region 597501	386 bp distal
Rr597502	regulatory region 597502	within coordinates
Spata6	spermatogenesis associated 6	within coordinates
Tssr38384	transcription start site region 38384	1625 bp downstream
Tssr38385	transcription start site region 38385	1599 bp downstream
Tssr38386	transcription start site region 38386	1577 bp downstream
Tssr38387	transcription start site region 38387	1490 bp downstream
Tssr38388	transcription start site region 38388	1471 bp downstream