rs265057000 SNP Detail

Summary

• ID
  rs265057000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77442283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAGCGT GACTCGCCCG
  CTCCAGTGCC ACCGGTTCCC GCTGCGCTTG CCGCCGCCGT CGCTGCGCAA CCATGTCGGA
  AGAGAAGCCC AAGGTAAGCC CGGTACGCAA GCCGCAGCAG ATTCCGCGGA ACGCAGGCCG
  GGCCGCGCGC AAAAAGGGCC CGCGGGGCCG CGCCCGAGCC TCAGCGCCCC TCCCCCACCG
  R
  CCCGCGCCCC TCCCCCACCA GCATTGCACT CCGCCCCGGG CAGCGCGCTA GCCCCACCCC
  CGGCTGTGCC TCCCGCCACA CCAAGGCTCC GCCTCCGGGG TAGCCCCGCC CCGGGTGTAG
  CCCCGCCCAC GGCTCGAGAA CCCGGAACTT GGGTGCTGGT TCTTGGTTCG CAAGGGCCTC
  ACTCCCTGAC GCGGCCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss380971356	MGP_WTSI_10_77069194	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	G	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs265057000					SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	G	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380971356	MGP_WTSI_10_77069194	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77442283 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1760	CpG island 1760			within coordinates
D10Jhu54	DNA segment, Chr 10, Johns Hopkins University 54			1680 bp distal
Gm49325	predicted gene, 49325			Intron
Rr402005	regulatory region 402005			within coordinates
Rr434546	regulatory region 434546			within coordinates
Rr434547	regulatory region 434547			133 bp proximal
Sumo3	small ubiquitin-like modifier 3			Intron
				Noncoding-Transcript-Variant
Tssr94265	transcription start site region 94265			382 bp downstream
Tssr94266	transcription start site region 94266			209 bp downstream
Tssr94267	transcription start site region 94267			194 bp downstream
Tssr94268	transcription start site region 94268			129 bp upstream
Tssr94269	transcription start site region 94269			212 bp upstream
Tssr94270	transcription start site region 94270			246 bp upstream
Tssr98239	transcription start site region 98239			664 bp downstream