rs265073943 SNP Detail

Summary

• ID
  rs265073943
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72027863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTAGAGA TAAATGGAAG
  TAAACCAGGG ACACATGGAA CACTTTGTTA GTCCCCAGCA ATGAAACAAA CTTCCAGGAG
  ACCTGTTTTG GAAACTTTTG CTCTTTGTTA GATACATTGT GGTAGTTAAA AATAAACAAG
  AGATATGAGT TAGAGATGGA AACTGAGCTT TAAACATTGT ATCTCAAAAT GTCTCCCCCC
  M
  CACACACACA CTCATTAGGA ACACTATTGC TAATACCGAT ATCTCTGTCA GCAAGAAACC
  CAATTTTTTT TTTGCCTTTT CAGGATCATT TTTGTATAAT TTTTATTTTT TGTTTCTTTA
  GTTCTCCTTT ATTTAATTCG TTTTCATTAT TCTGTTAATT CTTTTTATTC GAATCACTAG
  TTGTTTTCAC TGAACTATGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320341700	CHEV_2_72035576	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265073943					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72027863 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75163	predicted gene, 75163			within coordinates
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4			Intron
				Noncoding-Transcript-Variant
Rr558927	regulatory region 558927			662 bp distal
Rr558928	regulatory region 558928			139 bp distal
Rr558929	regulatory region 558929			287 bp distal