rs265100436 SNP Detail

Summary

• ID
  rs265100436
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74561278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGACTTT AACTACCCTT
  CTCTTCTCTT TTTTCCCCTC CCTGTAGCAT GGAGGCAGTC TTTGGAGACA GCATTTGAAA
  AGAGGCGGTA TCTTTAGGCC AATTGGAAAA TTGTTACTAC TCTTTCCTAA AAGGCAAATC
  TAAGCATACA TTGGACCATG TCCTTGGGGT GGGAAGTGTG TATTTTCACA ATATTCAGCT
  M
  TATAGCCACT GTGGAGATGG TTATACAGAT TTTTCCCTCT CCTCAGAAGT TCTGGTTACT
  CATCCAGCTT CAGACCAAAC ACTAGCCCTC CTTCCTCCTG CCCCAACAAA AAGCTAAAAG
  TTAAGAGAGT GCTTTCCTGA AGAAAACCCC AGCTTCTTCT CAAACAGCCC CACTGCTTTG
  GAAACTAACT AGAGCTGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348129	CHEV_2_74568991	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265100436					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74561278 () rs orientation: forward

Symbol	Name	Function Class
AI448005	expressed sequence AI448005	402 bp proximal
Cpgi11807	CpG island 11807	1701 bp proximal
Gm28230	predicted gene 28230	within coordinates
Hoxd3	homeobox D3	within coordinates
Hoxd4	homeobox D4	1774 bp downstream
Igs15	intergenic site 15	within coordinates
Rr57048	regulatory region 57048	1077 bp distal
Rr57049	regulatory region 57049	within coordinates
Rr373366	regulatory region 373366	within coordinates
Tssr18441	transcription start site region 18441	1101 bp downstream