rs265106423 SNP Detail

Summary

• ID
  rs265106423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158254486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTCAGT TCCTCATTCC
  CACAAGCCTC TCCACAAACC TACTTGTGAG TACAAAATGG CTGACCTCCC TCAGATCTAT
  TGTTATTCAA TACAAAGGGA GTTGAGTGCC ACCTGTTGAA GGAATATATA TATATATATA
  TATATATATA TATATATATA TATATAATCA GTTGTGTTTG ATTATGTATC AATTGTTAAT
  R
  CATACAATTT ACATTAAAAC TACTAAATAC TATTGAGACT TTTAGCTTTA TTAATTATTA
  TTTTTATTAT TTGTAGTCTT AGAGAGCAAA TTCAGGAACT TCCATGTTAC ATTGAGTAGT
  CTACCACTGT CTTAATATCC TGAGCACTAT TGAACATTTT ATAAAAACAT TTATTTTTTT
  CAAATTTGTG TTTGCCCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss405001560	MGP_WTSI_X_155909422	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs265106423					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss405001560	MGP_WTSI_X_155909422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158254486 () rs orientation: forward

Symbol	Name	Function Class
Map7d2	MAP7 domain containing 2	within coordinates
Tssr162488	transcription start site region 162488	1350 bp upstream
Tssr162489	transcription start site region 162489	1377 bp upstream