rs265119597 SNP Detail

Summary

• ID
  rs265119597
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80818750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATGTGTT ATATTATTAC
  CTAAAAACAC ATAATCTTTA GAAGTCATTA CTTAGTGTTT ATCTGTTGTA ATGGTTGGAT
  ATTTCCAGCT TTTATTGACC ATTAATATTA ACCCTTCTCA GAAAAGAACC CAGGCTGATA
  AACTTTGACT TTTGGGAGAC TGTAGCTGGA TGGTTTTTTC CTTTTTTTTT TTTTTTTAAA
  S
  AAAAGTACTT CTATATTTTA TCACACACTT TTTGAGGGAT ACACTAAATT CCTTTTGTAA
  GTCCTTTACA AAAAATACTT CAGAATAAAT GTCATGTACC ATGCAAATTT ACTTCCACTG
  TGTATAGCAA TGTAAATATA ATAGACCTCA AGATAATAGT TATCTGCTTC TTAATGATTC
  TCATTTCAGA TCATTTTAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320812960	CHEV_3_80715365	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265119597					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80818750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	1627 bp proximal
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	1095 bp upstream
Gm65109	predicted gene, 65109	1778 bp upstream
Rr578673	regulatory region 578673	1364 bp proximal
Rr578674	regulatory region 578674	1789 bp proximal